PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24140.1.p
Common NameBRADI_1g24140, LOC100843134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 291aa    MW: 31574.7 Da    PI: 8.418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05263284323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       Cp+C+k F+++ +L+ H  + H
  Bradi1g24140.1.p 263 CPKCSKGFRDPVLLVEHVEKeH 284
                       *****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.96E-13651No hitNo description
PROSITE profilePS510397.3411059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.7E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00641352IPR000058Zinc finger, AN1-type
PfamPF014285.0E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-1091151IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.75E-993145No hitNo description
PROSITE profilePS510397.91898145IPR000058Zinc finger, AN1-type
SMARTSM001540.0083101142IPR000058Zinc finger, AN1-type
PfamPF014283.1E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.92224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SMARTSM003559.3261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHKCLNA NKKDVTVLIC  60
PLCAKGVRLN PNEDANITWD SHVNTDCDPS NYQKATKKKK CPVPGCREAL TFSNTIRCKD  120
CSNEHCLKHR FGPDHKCPGP RKLEPTFPFS NMLRRSQKVQ PRTSSSSSSG SSSWWSSSLL  180
NAASSLRSSA EAGMQKLSIA TSEAVQMAKD GITPNSASSS GLVEQCVQCP AKFSTVGALI  240
EHAEKSHGNN SQSSRGKVTI DACPKCSKGF RDPVLLVEHV EKEHGGTSKA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2513470.0AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBankAK3609830.0AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBankAK3671740.0AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562919.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-166SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLI1GT940.0I1GT94_BRADI; Uncharacterized protein
STRINGBRADI1G24140.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein